Dear All,
I ran into the following problem when porting my package from Bioc 3.3 to
3.4. When I attach my package interactively (library(package), or via
load_all from devtools) everything works fine on both 3.3 and 3.4. However,
when I install my package (p.arc) and call it using:
Rscript -e 'p.
Hi, Andrea,
This page might be helpful for you:
https://www.bioconductor.org/developers/package-guidelines/#vignettes.
The "Write R extensions" manual also explaines how to write a citation file:
https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
Regards,
Chao-Jen Wong
Thanks very much!
Andrea
From: Wong, Chao-Jen
Sent: 28 December 2016 18:22:10
To: Rodriguez Martinez, Andrea
Cc: bioc-devel
Subject: Re: [Bioc-devel] Add journal citation to a package
Hi, Andrea,
This page might be helpful for you:
https://www.bioconductor.org/
Thank you for bringing this to our attention. There were some updates made a
few weeks ago to the behavior and input of 'TabixFileList()' . Its current
implementation will work with a character vector as input. I will investigate
further into why this change was made and if it needs to be addr
Dear Andrea
Have a look at this:
https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
Many CRAN and Bioconductor packages are doing this, you could look at some of
them for examples.
Wolfgang
> On 28 Dec 2016, at 15:49, Rodriguez Martinez, Andrea
> wrote:
>
>
hi,
the 'TabixFileList()' constructor in Rsamtools seems to be broken in devel:
library(Rsamtools)
example(TabixFileList) ## which actually does not construct any
'TabixFileList'
TabixFileList(tbx)
Error in as.vector(x, "character") :
cannot coerce type 'environment' to vector of type 'chara
On 23 December 2016 16:36, Laurent Gatto wrote:
> Dear all,
>
> I'm following up re my online references suggestion with my recent
> experience with Hadley's pkgdown package
>
> https://github.com/hadley/pkgdown
>
> It doesn't address the cross-package issue (which is a difficult one
> anyway),
Well that's embarrassing, thanks Val!
On Tue, Dec 27, 2016 at 11:00 PM, Obenchain, Valerie <
valerie.obench...@roswellpark.org> wrote:
> I think you're missing a 'u',
>
> > biocLite("hgu133plus2.db")
> BioC_mirror: https://bioconductor.org
> Using Bioconductor 3.5 (BiocInstaller 1.25.2), R Under
Hi,
I'd like to add the corresponding journal citation to my package. How can I do
that?
Thanks very much in advance,
Best wishes,
Andrea
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Dear BiocDevel, Bioconductor team :
I want to know how can I get further assessment and assist for my package
to Bioconductor Project. I've created issue to
https://github.com/Bioconductor/Contributions and system marked as "Review
in Progress", package reviewer was assigned. Since my submission,
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