Re: [Bioc-devel] error from biocLite on OSX with R-devel / Bioc-devel

2017-02-01 Thread Martin Morgan
On 02/01/2017 01:11 PM, Kevin Ushey wrote: Although installation succeeds for me (macOS Sierra with recent R-devel), I see the following output in an interactive session when I try to install the lazyeval package: install.packages('lazyeval', repos = BiocInstaller:::biocinstallRepos())

Re: [Bioc-devel] GenomeInfoDb::Seqinfo() failing with 404 error

2017-02-01 Thread Hervé Pagès
Hi Raymond, On 02/01/2017 04:39 AM, Raymond Cavalcante wrote: Hello, I was wondering if any progress has been made on fixing this? I looked through recent commits for GenomeInfoDb, but there didn't seem to be anything related to this problem. Not yet. Please expect a couple more days

Re: [Bioc-devel] error from biocLite on OSX with R-devel / Bioc-devel

2017-02-01 Thread Kevin Ushey
Although installation succeeds for me (macOS Sierra with recent R-devel), I see the following output in an interactive session when I try to install the lazyeval package: > install.packages('lazyeval', repos = BiocInstaller:::biocinstallRepos()) Installing package into

[Bioc-devel] tokay2 outage

2017-02-01 Thread Obenchain, Valerie
Hi, We've been having problems with our Windows devel builder, tokay2 (https://stat.ethz.ch/pipermail/bioc-devel/2017-January/010424.html). It's been determined the battery for the storage array is bad and needs to be replaced. The work is scheduled for tomorrow, Thursday Feb 2 at at 10am EST.

Re: [Bioc-devel] GenomeInfoDb::Seqinfo() failing with 404 error

2017-02-01 Thread Raymond Cavalcante
Hello, I was wondering if any progress has been made on fixing this? I looked through recent commits for GenomeInfoDb, but there didn't seem to be anything related to this problem. Thanks, Raymond > On Jan 25, 2017, at 23:01, Obenchain, Valerie > wrote: >

Re: [Bioc-devel] error from biocLite on OSX with R-devel / Bioc-devel

2017-02-01 Thread Vincent Carey
i did not mean to implicate biocLite ... i am being too terse. i mention it because, after so many years of biocLite being spectacularly reliable ... persistence of a problem with its performance implies a serious upstream problem that would be very nice to eradicate ... On Wed, Feb 1, 2017 at