Re: [Bioc-devel] Package not being built on Windows or Mac

As I recall, there were issues building RCytoscape (and packages that depend on it) on Mac and Windows. Mostly because this requires a running instance of Cytoscape for each platform (and double that for release + devel). That used too much infrastructure so we disabled building on those

Re: [Bioc-devel] Package not being built on Windows or Mac

It's probably because you depend on RCytoscape, which isn't supported on Windows or MacOS. And maybe this has something to do with XMLRPC? Jim On Mon, Mar 20, 2017 at 4:59 PM, Robert M. Flight wrote: > As per the exhortation to check the build status on Devel prior to

[Bioc-devel] Package not being built on Windows or Mac

As per the exhortation to check the build status on Devel prior to next version of Bioconductor release, I just noticed that my package categoryCompare has a "not supported" on Windows and Mac. Looking at release history, this seems to I have changed at Bioc v 3.4, and I'm curious why that would

[Bioc-devel] tximport fails to build on Windows

Anyone have any ideas for how to debug this? I get an error from the tximport vignette on tokay2, but I can't figure out what could be the issue: ... 1 Quitting from lines 185-189 (tximport.Rmd) Error: processing vignette 'tximport.Rmd' failed with diagnostics: cannot open the connection

[Bioc-devel] Bioconductor 3.5 release

Hi all, The release of Bioconductor 3.5 will be Tuesday, April 25. Please see the schedule for details: http://www.bioconductor.org/developers/release-schedule/ Over the next month we'll announce the key deadlines on bioc-devel. Lori sent the first one last week and it's important for anyone

Re: [Bioc-devel] Perl version issue with building Rhtslib

Hi Dinakar -- your patch didn't make it through the mailing list; can you forward it to me directly? Thanks, Martin On 03/17/2017 12:45 PM, Dinakar Kulkarni wrote: Hello, The following error was generated while attempting to install the "Rhtslib" package in R v3.3.2: /usr/bin/perl: symbol

Re: [Bioc-devel] developing R package for new release

On Fri, Mar 17, 2017 at 3:45 PM, Nicholas Clark wrote: > I’m planning on adding some new features to my package (GRmetrics) before > this upcoming release and I have a few development questions. > > > 1) Which version of R should I be using? I looked at this page ( >

[Bioc-devel] developing R package for new release

I’m planning on adding some new features to my package (GRmetrics) before this upcoming release and I have a few development questions. 1) Which version of R should I be using? I looked at this page (http://bioconductor.org/developers/how-to/useDevel/ ), but I was still confused as to whether