Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

2017-04-14 Thread Hervé Pagès
Hi Ramon, Good news: looks like a Cairo binary for R 3.4 showed up on CRAN yesterday: https://cran.r-project.org/bin/macosx/el-capitan/contrib/3.4/ I installed it on veracruz2, and, according to the logs of the current builds, ADaCGH2 built and checked successfully on this machine :-) If

[Bioc-devel] devel builds April 13-14

2017-04-14 Thread Obenchain, Valerie
Hi, Just a heads up that the devel build reports for April 13 and 14 do not reflect the most current commits to svn. We accidentally disabled the script that refreshes our internal repo before the build so the past 2 build cycles used packages from April 11. The build report for Saturday, April

Re: [Bioc-devel] Error in tokay2

2017-04-14 Thread Obenchain, Valerie
Hi Juan Pablo, We think this is a problem related to installed.packages(), see discussion here: https://stat.ethz.ch/pipermail/bioc-devel/2017-April/010819.html You can ignore this for now. Thanks for keeping an eye on the build report. Valerie On 04/14/2017 12:41 AM, Romero, Juan Pablo

[Bioc-devel] build on different version

2017-04-14 Thread Robert Castelo
hi, on tuesday april 11th i checked in changes for VariantFiltering version 1.11.10 and i've seen that today the build for tuesday gives errors on version 1.11.9 with snapshot date from april 7th. i do my devel changes in the github repo rcastelo/VariantFiltering and check them into SVN,

Re: [Bioc-devel] Error in tokay2

2017-04-14 Thread Rodriguez Martinez, Andrea
Hello, I also have an error with tokay2 in the release branch (not in devel) of my package MetaboSignal. It's an error that I have seen before: Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called 'Biobase' >From what I was told another

[Bioc-devel] Error in tokay2

2017-04-14 Thread Romero, Juan Pablo
Hello all, I know that today is the deadline for passing R CMD build and R CMD check without errors and warnings, and my package EventPointer has been working perfectly for the last weeks. Today the build report in tokay2 shows an error in one of the examples: ** running examples for arch