Re: [Bioc-devel] Question : GitHub-Commit changes to the released branch

Thanks so much, Lori! Best, Julie From: "Shepherd, Lori" Date: Friday, August 25, 2017 at 1:58 PM To: "Zhu, Lihua (Julie)" , "bioc-devel@r-project.org" Subject: Re: Question : GitHub-Commit changes to the

Re: [Bioc-devel] Question : GitHub-Commit changes to the released branch

The current release is RELEASE_3_5 Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of

Re: [Bioc-devel] Package changes not merging with upstream

Thanks Martin, I retried the push to upstream and it works just fine now. Thanks Matt On Fri, Aug 25, 2017 at 10:27 AM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > On 08/25/2017 01:17 PM, Matt Richards wrote: > >> Hi all, >> >> I maintain the "trena" package and I'm attempting to

[Bioc-devel] Question : GitHub-Commit changes to the released branch

Hi, I need to fix a bug in the development and released version of CRISPRseek. So far, I have successfully updated the dev version of CRISPRseek following the guides at https://www.bioconductor.org/developers/how-to/git/maintain-bioc-only/. I have a couple of question regarding commit changes

Re: [Bioc-devel] Package changes not merging with upstream

On 08/25/2017 01:17 PM, Matt Richards wrote: Hi all, I maintain the "trena" package and I'm attempting to sync the changes from my in-house Github repo with the Bioconductor version. I submitted my ssh keys last week, so essentially I'm following these instructions:

[Bioc-devel] Package changes not merging with upstream

Hi all, I maintain the "trena" package and I'm attempting to sync the changes from my in-house Github repo with the Bioconductor version. I submitted my ssh keys last week, so essentially I'm following these instructions: https://www.bioconductor.org/developers/how-to/git/sync-

Re: [Bioc-devel] Package not updated in build system from github

Thank you Martin! I had missed that part. Indeed maybe you can update the instructions for non-git masters (like me). On Fri, Aug 25, 2017 at 1:14 PM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > On 08/25/2017 03:36 AM, Panagiotis Moulos wrote: > >> Dear all, >> >> For some time now,

Re: [Bioc-devel] Package not updated in build system from github

On 08/25/2017 03:36 AM, Panagiotis Moulos wrote: Dear all, For some time now, my package metaseqR fails to pass the checks at the build system http://bioconductor.org/checkResults/3.6/bioc-LATEST/metaseqR/ Although I am not sure I understand the source of the problem (all is well in my local

[Bioc-devel] Package not updated in build system from github

Dear all, For some time now, my package metaseqR fails to pass the checks at the build system http://bioconductor.org/checkResults/3.6/bioc-LATEST/metaseqR/ Although I am not sure I understand the source of the problem (all is well in my local systems), "Error : object ‘vsn’ is not exported by