Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Charles Warden
Hi Martin and Sean, Thanks for your help - I think the issue may be that I don't have a private key on the second computer (and the passcode still isn't recognized if I remove the .pub extension). I was trying to set up a deploy key on GitHub that would only apply to the COHCAP repository, but I

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Martin Morgan
On 09/09/2017 09:06 PM, Sean Davis wrote: Hi, Charles. See inline. On Sat, Sep 9, 2017 at 8:40 PM, Charles Warden wrote: Hi, I'm sorry, but I am having an issue setting up my ssh key. In particular, it is not recognizing the passcode (and I've tried copying over a new

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Sean Davis
Hi, Charles. See inline. On Sat, Sep 9, 2017 at 8:40 PM, Charles Warden wrote: > Hi, > > I'm sorry, but I am having an issue setting up my ssh key. In particular, > it is not recognizing the passcode (and I've tried copying over a new > id_rsa.pub file as well as

Re: [Bioc-devel] COHCAP GitHub Update

2017-09-09 Thread Charles Warden
Hi, I'm sorry, but I am having an issue setting up my ssh key. In particular, it is not recognizing the passcode (and I've tried copying over a new id_rsa.pub file as well as double-checking the passcode): :~/.ssh$ ssh-add id_rsa.pub Enter passphrase for id_rsa.pub: Bad passphrase, try again

Re: [Bioc-devel] NEWS, inst/NEWS, NEWS.md

2017-09-09 Thread Henrik Bengtsson
Note that NEWS.md (Markdown) is only partially supported, e.g. news() does _not_ pick it up, cf. https://github.com/HenrikBengtsson/Wishlist-for-R/issues/40 /Henrik On Sat, Sep 9, 2017 at 4:43 PM, Martin Morgan wrote: > On 09/09/2017 06:11 PM, Levi Waldron wrote:

Re: [Bioc-devel] pandoc SSL error on malbec2 and tokay2

2017-09-09 Thread Nan Xiao
Hey Martin, - thanks a lot for the very detailed reply. I appreciate the great efforts your team has made, and I understand that it's hard to keep everything in check especially on a large scale. :) I dug further into the issue, and eventually, it seems to be a problem in the communication

Re: [Bioc-devel] NEWS, inst/NEWS, NEWS.md

2017-09-09 Thread Martin Morgan
On 09/09/2017 06:11 PM, Levi Waldron wrote: What's the currently recommended location for package NEWS? At https://www.bioconductor.org/developers/package-submission/ it says inst/NEWS, and I feel like I heard somewhere that NEWS.md was supported. But in a scan of the first page of

[Bioc-devel] NEWS, inst/NEWS, NEWS.md

2017-09-09 Thread Levi Waldron
What's the currently recommended location for package NEWS? At https://www.bioconductor.org/developers/package-submission/ it says inst/NEWS, and I feel like I heard somewhere that NEWS.md was supported. But in a scan of the first page of https://github.com/bioconductor, all use NEWS in the base