Re: [Bioc-devel] [Untrusted Server]Re: [Untrusted Server]Re: strange error in Jenkins build forsingleCellWorkflow

Hi Aaron, Would you mind sharing the code for flushing DLLs? This is a problem that others working with single cells and I have faced. Better yet would anyone know of code that would allow unused DLL to be identified and unloaded? I suspect not as it would require keeping track of the

Re: [Bioc-devel] [Untrusted Server]Re: strange error in Jenkins build forsingleCellWorkflow

Well, inertia won out in the end, and so I've just moved a whole stack of packages into "Suggests" for now. This is probably not a sustainable solution as the workflow can potentially get larger over time; I would prefer to have some formal support for splitting up the workflow into modules

Re: [Bioc-devel] Generic for write to BiocGenerics

I was also about to suggest that we converge on export() but held back because I was obviously biased. I also agree with making the target explicit in the function name. It makes the intent of the code way more obvious. On Mon, Sep 18, 2017 at 3:15 PM, Hervé Pagès wrote: >

Re: [Bioc-devel] Generic for write to BiocGenerics

Hi jo, At the moment probably not much to be gained unless you ran into some conflicts with other "write" methods defined in Bioconductor? Note that the arguments/signature of base::write() don't really help making it a clean generic functions (e.g. weird 'file' default, 'ncolumns' and 'sep'

Re: [Bioc-devel] hook declined to update error

Hi Anand, Each file needs to be smaller than 5Mb. If you have a file larger than 5mb, the pre-receive hook will tell you which file failed. Can you tell me why you are using “—force” or “-f” flag? We don’t allow force pushes to the bioconductor git server. Try without it

Re: [Bioc-devel] hook declined error

Hi Anand, Each file needs to be smaller than 5Mb. If you have a file larger than 5mb, the pre-receive hook will tell you which file failed. Can you tell me why you are using “—force” or “-f” flag? We don’t allow force pushes to the bioconductor git server. Did you submit your SSH key to the

[Bioc-devel] Generic for write to BiocGenerics

Dear all! We are currently implementing mzML write support in `MSnbase` and did implement a `write` method for the S4 objects in `MSnbase`. Now, the question is whether it might not be better to define a `write` S4 generic in `BiocGenerics`? cheers, jo

[Bioc-devel] BioCor devel timeout

Dear developers, The package I maintain (BioCor) builds correctly on malbec1 (Linux) and veracruz1 (OS X) in the development but not in tokay1 (Windows machine) server. It timesout. I am not sure what causes this, I don't fetch anything from the website. Last Windows downloadable version is

Re: [Bioc-devel] Bioconductor failing package MEAL

Hi, It worked. Now I can make pushes. Thanks, Carlos El 14/09/2017 a las 20:23, Turaga, Nitesh escribió: Bioc-git server* (git.bioconductor.org). Ignore the typo. On Sep 14, 2017, at 2:20 PM, ni41435_ca wrote: Hi Carlos Your ID is standardized across all