Re: [Bioc-devel] [Untrusted Server]Re: [Untrusted Server]Re: [Untrusted Server]Re: strange error in Jenkins build forsingleCellWorkflow

2017-09-26 Thread Vincent Carey
in particular it would be good to have some information on how to get section numbers in HTML documents produced from rmarkdown to start with a specified value. for pdf, setcounter can be used. so far i have been unable to get an HTML document produced with first section numbered other than 1. {

Re: [Bioc-devel] [Untrusted Server]Re: [Untrusted Server]Re: [Untrusted Server]Re: strange error in Jenkins build forsingleCellWorkflow

2017-09-26 Thread Vincent Carey
I am running into this limitation now, while writing a background document for an edX course. I am going to try to make linux my production environment for the document. But who knows whether I can keep the number of DLLs loaded to under 1000? Are there no prospects whatsoever for reducing the n

[Bioc-devel] R: R: R: Errors updating DaMiRseq package

2017-09-26 Thread Mattia Chiesa
Dear all, I have seen that my package (DaMiRseq) is in status "ERROR" after my last little modifications. It's a bit strange for me because locally everything is all right. Looking at the build report ( http://bioconductor.org/checkResults/devel/bioc-LATEST/DaMiRseq/tokay1-buildsrc.html ), it s

Re: [Bioc-devel] [Untrusted Server]Re: [Untrusted Server]Re: [Untrusted Server]Re: strange error in Jenkins build forsingleCellWorkflow

2017-09-26 Thread Shian Su
Hey Aaron, Be careful with bumping the number up too high out of consideration for us poor Mac users. Standard Mac systems only allow 256 files open at once, so there may be unintended consequences. Kind regards, Shian Su > On 26 Sep 2017, at 5:04 pm, Aaron Lun wrote: > > Hi Herve, > > > I

Re: [Bioc-devel] biocLite and automatic installing of packages Imports packages

2017-09-26 Thread Martin Morgan
On 09/25/2017 09:40 PM, Stefan Mutter wrote: Hi, we are currently developing a package that we want to submit to Bioconductor and I am working on the documentation part at the moment. Our packages requires Rcpp and we have added this dependency under Imports into the DESCRIPTION file. What

[Bioc-devel] biocLite and automatic installing of packages Imports packages

2017-09-26 Thread Stefan Mutter
Hi, we are currently developing a package that we want to submit to Bioconductor and I am working on the documentation part at the moment. Our packages requires Rcpp and we have added this dependency under Imports into the DESCRIPTION file. What I am wondering is whether in this situation bio

Re: [Bioc-devel] [Untrusted Server]Re: [Untrusted Server]Re: strange error in Jenkins build forsingleCellWorkflow

2017-09-26 Thread Martin Morgan
On 09/26/2017 03:04 AM, Aaron Lun wrote: Hi Herve, I tried out the .BBSoptions approach, but it seems that the build system is still having some trouble: http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/label=master/59/console I bumped up the maximum number of DLLs to 200 in .

Re: [Bioc-devel] [Untrusted Server]Re: [Untrusted Server]Re: strange error in Jenkins build forsingleCellWorkflow

2017-09-26 Thread Aaron Lun
Hi Herve, I tried out the .BBSoptions approach, but it seems that the build system is still having some trouble: http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/label=master/59/console I bumped up the maximum number of DLLs to 200 in .BBSoptions, but to no effect. Any ideas?