Hi Marcel,
Thanks for looking into this. I fixed it and pushed. Lets see if the
package is building without errors now!
Cheers,
Maarten
On Wed, Dec 13, 2017 at 9:53 PM, Marcel Ramos
wrote:
> Hi Maarten,
>
> Sorry about the confusion. The link you provided pointed to errors in
> *omicRexposome*
Hi Maarten,
Sorry about the confusion. The link you provided pointed to errors in
*omicRexposome*.
It appears that the errors you're getting for *omicsPrint* have to do
with the `getGEO` call on
line #261 in the vignette.
It can be fixed if you introduce a `fileext` argument to `tempfile()`.
P
Hi Marcel,
Thanks for your help, do you mean I should add "bgredata" to our DESCR
file? omicsPrint should not depend on it?
This sessionInfo when omicsPrint is loaded:
> library(omicsPrint)
Loading required package: MASS
in method for ‘coerce’ with signature
‘"RangedRaggedAssay","RaggedExperimen
Hi Maarten,
It appears that your vignette is pointing to a package that doesn't
exist in the build system.
Please reference `package = "brgedata"` instead.
Regards,
Marcel
*Note. Apologies if you've received this email twice.
On 12/13/2017 02:09 PM, Maarten van Iterson wrote:
> Dear all,
>
>
Hi Maarten,
It appears that your vignette is pointing to a package that doesn't
exist in the build system.
Please reference `package = "brgedata"` instead.
Regards,
Marcel
On 12/13/2017 02:09 PM, Maarten van Iterson wrote:
> Dear all,
>
> Our new package, omicsPrint, has been accepted and add
Dear all,
Our new package, omicsPrint, has been accepted and added to the
bioconductor build system but is not passing through on any system. Locally
we are able to build install and execute the vignette. We have tried
several things without success.
The current error we got for version 0.99.29 o
Hi George,
If you’ve had an SVN id before, then you would have to submit that. I’ve
checked your submission and you have to submit just your SVN ID, not the
password. Please try and check for this.
Otherwise, there is no way for us to associate your package with your Github
ID.
Best,
Nitesh
Testing is complete. The single package builder should be functioning normally
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on
While we wait for the changes to come online: would you be open to PRs
to workflow.md? I was thinking of making a nested list for the
Introduction/part 1/part 2/part 3, which is a bit nicer to read.
-A
On 12/12/17 22:11, Andrzej Oleś wrote:
> Thanks for you feedback Aaron!
>
> On Tue, Dec 12,