Re: [Bioc-devel] Problem with GenomicFeatures::extractTranscriptSeqs

Thanks Herve! I can confirm that after updating to IRanges 2.13.24, GenomicRanges 1.31.18 and Biostrings 2.47.9 all works again. thanks, jo > On 9 Feb 2018, at 10:31, Hervé Pagès wrote: > > Hi Johannes, > > This should be fixed by now. > > I also committed a small

Re: [Bioc-devel] GPos slower than GRanges ?

Hi Charles, On 02/08/2018 08:03 PM, Charles Plessy wrote: Hello, I have just discovered the GPos class, and I would like to use it in my "CAGEr" package, where for the moment I store single-nucleotide positions of transcription start sites in GRanges of width 1. But a simple microbenchmark

Re: [Bioc-devel] Problem with GenomicFeatures::extractTranscriptSeqs

Hi Johannes, This should be fixed by now. I also committed a small change to ensembldb (commit e4b9ffc54a35d8f4d8c398b94a53e0b65b48cbab) to fix a problem introduced by some recent changes to GenomicRanges so ensembldb should turn green again on Saturday's build report. Let me know if you still