Re: [Bioc-devel] Questions about some checks in the latest BiocCheck

2018-11-28 Thread Vincent Carey
Can you provide the repo for your package in development? These BiocCheck issues are important and should be resolved at your end. We can give some advice on how to get better results with BiocCheck. On Wed, Nov 28, 2018 at 10:34 AM Casper Peters wrote: > So in the package I'm developing, I

[Bioc-devel] Questions about some checks in the latest BiocCheck

2018-11-28 Thread Casper Peters
So in the package I'm developing, I have a few specific use cases that make BiocCheck not so happy. 1: ``` * WARNING: Avoid class()== or class()!= ; use is() or !is() ``` So my first problem arises with checking the classes of objects. I want the interface to be such that I can allow for

Re: [Bioc-devel] NEWS file, latest R/Bioc devel version

2018-11-28 Thread Shepherd, Lori
I haven't updated the Bioconductor package guideline page nor the function in Bioconductor to account for files with .md - This was a recent addition and only available in R-devel (R 3.6) - Having a NEWS file previous, had to be in NEWS or NEWS.Rd . I plan to update these functions later