OK, thanks Bioconductor, we'll sit tight and wait for it to propagate.
- Sam
On 2/13/19 10:06 AM, Shepherd, Lori wrote:
>
> External Email - Use Caution
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> Herve implemented a fix in release and devel as indicated by the
> support site question
>
> https://support.bioconductor.org/p/
We need more information here.
> On Feb 12, 2019, at 6:14 PM, Khadija El Amrani wrote:
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Herve implemented a fix in release and devel as indicated by the support site
question
https://support.bioconductor.org/p/117808/
It has yet to propagate to the system but should be up later today.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostat
Dear Bioconductor,
The GenomeInfoDb package is generating an error in 3.8 and causing our
package bumphunter to crash too.
Our test calls GenomeInfoDb::fetchExtendedChromInfoDb and crashes with
an error that says some UCSC seqlevels in hg38 couldn't be mapped to
NCBI seqlevels. The release v
Note that your visual won't show up for many (all?) of us. Nonetheless,
I think I know what you want to do.
Your task does not lend itself to vectorization, which makes it
difficult to write efficient R code. It's not impossible, but it would
be quite hard to read and debug, and your maintenance p
