Re: [Bioc-devel] BiocManager not installing latest release version of DepecheR

2019-11-14 Thread Aaron Lun
I would assume that "BiocManager::install()" won't update an existing set of BioC packages unless explicitly prompted. If that's the case, shouldn't the instructions at http://bioconductor.org/install/ specify "BiocManager::install(version='3.10')"? On Wed, Nov 13, 2019 at 1:04 PM Shepherd, Lori

[Bioc-devel] R CMD build error for new package.

2019-11-14 Thread Kumar, Ashwath
Hello, I am trying to submit a new package to Bioconductor and received the automated R CMD check report and it seems to have failed. For reference the R CMD build error is from the creating vignette step. Quitting from lines 56-61 (CSSQ.Rmd) Error: processing vignette 'CSSQ.Rmd' failed with diag

Re: [Bioc-devel] Python Z trees to hclust

2019-11-14 Thread Bernat Gel Moreno
Hi Peter, Thanks for the advice and pointers to the relevant files. After reading the Fortran code and thinking about it I ended up coding from scratch my own pure R function to set the plotting order of an hclust object. It might not be as fast as the Fortran implementation, but it works prett