[Bioc-devel] BiocCredentials & transfer maintenance

2019-11-18 Thread Renan Sauteraud
I am trying to transfer the maintenance of 3 packages (PICS, PING and Pviz) to a new email address. I no longer have access to the email associated with the packages and to push the changes, I need to submit my SSH keys via BiocCredentials. However, because my gmail address is not yet associated

Re: [Bioc-devel] package download stats seem unavailable

2019-11-18 Thread Leonardo Collado Torres
Oops, I'm behind on my BioC Slack updates! Thanks for the reminder hehe On Mon, Nov 11, 2019 at 8:18 PM Pages, Herve wrote: > Hi Leonardo, > > The download stats are temporarily unavailable and should be back > tomorrow (as discussed last week on the community-bioc Slack, #general > channel). >

Re: [Bioc-devel] List of Deprecated Packages Bioc 3.11

2019-11-18 Thread Paul Shannon
Hi Lori, Is there a replacement for the athaliana package, org.At.tair.db? We sometimes use this in our work. - Paul > On Nov 18, 2019, at 6:24 AM, Shepherd, Lori > wrote: > > The Bioconductor Team is continuing to identify packages that will be > deprecated in the next release to allow

[Bioc-devel] List of Deprecated Packages Bioc 3.11

2019-11-18 Thread Shepherd, Lori
The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. The current list of deprecated packages for Bioc 3.11 is as follows: Maintainer requested

Re: [Bioc-devel] Git pushing problems for data package

2019-11-18 Thread Turaga, Nitesh
Also, do you have any other email address registered? To my previous email, to remove any ambiguity, when you run https://git.bioconductor.org/BiocCredentials/permissions_by_user/, you should see access to, methylumi methyAnalysis MTseeker MTseekerData biscuiteerData biscuiteer

Re: [Bioc-devel] Git pushing problems for data package

2019-11-18 Thread Turaga, Nitesh
Hi Tim, I've standardized your user name across your packages. Firstly, please check https://git.bioconductor.org/BiocCredentials/permissions_by_user/, And tell me what you see? Nitesh On 11/18/19, 5:27 AM, "Bioc-devel on behalf of Turaga, Nitesh" wrote: Hi Tim, It seems

Re: [Bioc-devel] Git pushing problems for data package

2019-11-18 Thread Turaga, Nitesh
Hi Tim, It seems like you may have had more than two usernames. I might have ended my search too early. I'll fix this. Just give me a little time. Best Nitesh -- Nitesh Turaga Senior Programmer Analyst Bioconductor core team Roswell Park From: Tim Triche,

[Bioc-devel] Bioconductor Developers Forum - Thursday 21st November

2019-11-18 Thread Mike Smith
Dear all, The next Bioconductor Developers' Forum is scheduled for Thursday 21st November at 09:00 PDT/ 12:00 EDT / 18:00 CEST We will be using BlueJeans and the meeting can be joined via: https://bluejeans.com/114067881 (Meeting ID: 114 067 881) This month we currently don't have any