Re: [Bioc-devel] Error in Vignette of package

2019-12-06 Thread Pages, Herve
Great news Andrzej! We'll keep a close eye on the build reports in the next few days. Fingers crossed. Thanks! H. On 12/6/19 03:46, Andrzej Oleś wrote: > Dear Package Developers, > > An updated version of BiocStyle has been deployed to both the development > and the release branch. The fix

Re: [Bioc-devel] Long Tests builds

2019-12-06 Thread Pages, Herve
Hi Mike, On 12/6/19 00:51, Mike Smith wrote: > Thanks Hervé for documenting this, should be very useful. > > Do you think there's any merit in identifying if there are currently > packages that take very close to the 40 minutes mark at the moment, and > pointing this feature out to the

[Bioc-devel] proposal for additional seqlevelsStyle

2019-12-06 Thread Vincent Carey
I raised this issue previously with little response. I'd propose that we add a column or two to genomeStyles()$Homo_sapiens > head(genomeStyles()$Homo_sapiens, 2) circular auto sex NCBI UCSC dbSNP Ensembl 1FALSE TRUE FALSE1 chr1 ch1 1 2FALSE TRUE FALSE2 chr2 ch2

Re: [Bioc-devel] Error in Vignette of package

2019-12-06 Thread Andrzej Oleś
Dear Package Developers, An updated version of BiocStyle has been deployed to both the development and the release branch. The fix addresses vignette build errors occurring with rmarkdown v1.18, these should clear up within the next build cycle. Cheers, Andrzej On Wed, Dec 4, 2019 at 2:31 PM

Re: [Bioc-devel] Long Tests builds

2019-12-06 Thread Mike Smith
Thanks Hervé for documenting this, should be very useful. Do you think there's any merit in identifying if there are currently packages that take very close to the 40 minutes mark at the moment, and pointing this feature out to the maintainers directly? I don't know how tight for time the build