Hard to say why you got results if the ‘Homo.sapiens’ organismDb package was
not installed! And a tiny bit disturbing. You will want to use
BiocManager::install(“Homo.saliens”) to ensure the bits are in place (and if
you don’t have BiocManager installed, you’ll want to fix that using
Absolutely true. Even better would be a workflow which is what I’ve started
trying to “groom” students/people appealing for help into ;-)
Is there a recommended way to segue this type of discussion to
support.bioconductor.org without losing context? I used to get emails from the
site when I
Dear Vincent,
Maybe we can move the discussion retrospectively? At the moment it seems we are
tweaking a few things of which the for last obstacle good be tackled thanks to
you. The only remaining issue is that I cant get results for my genes of
interest. In stead I keep getting the same
This has been a very interesting and illuminating dialogue but it really
should be moved to
support.bioconductor.org so that a record is available to the general user
community.
The solution here
> library(Homo.sapiens)
Error in library(Homo.sapiens) :
there is no package called ‘Homo.sapiens’
Dear Tim,
Thanks again for your (quick) reply.
I just ran it on my computer and it gave me some results but also several
errors.
The first part went perfect
> BamFiles <- BamFileList(lapply(list.files(pattern=".bam$"), BamFile))
> names(BamFiles) <-
