I have found the BIocnductor docker images very helpful in reproducing the
build environment:
https://www.bioconductor.org/help/docker/
I used a combination of the examples under "modifying the images" to get a
version of the docker images that would build my vignettes, and also
install all depend
Hi Hervé,
Thank you! You saved me.
Best!
Your sincerely,
Jianhong Ou
> On Apr 24, 2020, at 5:59 PM, Hervé Pagès wrote:
>
> Hi Jianhong,
>
> I just updated R from R 4.0 alpha to the final R 4.0.0 on machv2 and the good
> news is that I no longer get a TIMEOUT with this new R:
>
> machv2:m
LOL
On 4/24/20 15:00, Jianhong Ou, Ph.D. wrote:
Hi Hervé,
Thank you! You saved me.
Best!
Your sincerely,
Jianhong Ou
On Apr 24, 2020, at 5:59 PM, Hervé Pagès wrote:
Hi Jianhong,
I just updated R from R 4.0 alpha to the final R 4.0.0 on machv2 and the good
news is that I no longer get
Hi Jianhong,
I just updated R from R 4.0 alpha to the final R 4.0.0 on machv2 and the
good news is that I no longer get a TIMEOUT with this new R:
machv2:meat biocbuild$ time R CMD build motifStack
* checking for file ‘motifStack/DESCRIPTION’ ... OK
* preparing ‘motifStack’:
* checking DESCRIP
Hi,
Are you using R 4.00 on Ubuntu?
Travis error indicates that you are using class(), output of this command has
changed.
https://www.bioconductor.org/developers/how-to/troubleshoot-build-report/#classEq
BW,
Andris
On 24 Apr 2020 20:40, kone...@bcgsc.ca wrote:
A package I maintain, contiBAI
Hi Kieran,
It looks like your Travis build is failing because of your vignettes:
Error: processing vignette 'contiBAIT.Rnw' failed with diagnostics:
6542 chunk 13 (label = orderAllLinkageGroupsExampleb)
6543Error in if (spearmanCor < 0) { : missing value where TRUE/FALSE needed
6544
6545
The
A package I maintain, contiBAIT, is failing to build on the BioC test servers.
https://bioconductor.org/checkResults/3.11/bioc-LATEST/contiBAIT/malbec2-buildsrc.htmlv
It's also failing on my Travis build set up on GitHub
https://travis-ci.org/github/oneillkza/ContiBAIT/builds/674999114
But
Hello Bioconductor community,
There have been some recent changes to our workflow for creating the GO.db
annotation package. The information was previously provided in SQL file format,
but these files are no longer updated and obo files are created instead.
Accounting for this change has caused a
Hi,
This seems related
https://twitter.com/opencpu/status/1253649367946444802?s=21
Best,
Leo
On Wed, Apr 22, 2020 at 6:54 AM Gordon K Smyth wrote:
> Hi Herve,
>
> > Are you saying that 'R CMD config CC' returns
> > /mingw64/bin/x86_64-w64-mingw32-gcc-8.3.0 with the latest
> > Windows build of
I also had an issue related to cropping using BiocStyle pdf_document, and used
the same fix.
https://github.com/Bioconductor/BiocStyle/issues/75
Gavin
From: Bioc-devel on behalf of
mtmorgan.b...@gmail.com
Sent: 24 April 2020 11:26:30
To: Leonardo Collado Torres;
Thanks for the detective work Leo; to me it sounds like, for robust output
(function more important than form) BiocStyle should not try to crop images.
Martin
On 4/24/20, 12:52 AM, "Bioc-devel on behalf of Leonardo Collado Torres"
wrote:
Hi Bioc-devel again,
I believe that I have f
11 matches
Mail list logo
