Re: [Bioc-devel] Website Not Updating

2020-06-18 Thread Chengyang . Ji12
Hi, I added �Phylogenetics� and �SNP� to BiocViews of my package sitePath in both release and develop version. Wonder if that�s causing the problem. Because �Phylogenetics� is a legit BiocViews so far as I know but was never used before. And changing BiocViews is not �bug fix� update which

[Bioc-devel] updating package on the development version

2020-06-18 Thread Dwivedi, Bhakti
Hi, I am trying to update previous release of my package (GISPA) on the development version. I pushed the changes and new release GISPA 1.13.1 following https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ But, I do not see the change on the bioconductor development

[Bioc-devel] Website Not Updating

2020-06-18 Thread Shepherd, Lori
Hello All, It was brought to our attention that our website was not updating over the last few days. You may see outdated or missing package landing pages. We are working on a fix that should be implemented by the end of the day today. Cheers, Lori Shepherd Bioconductor Core Team Roswell

[Bioc-devel] Bioconductor package devel site not updating

2020-06-18 Thread Hoffman, Gabriel
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Re: [Bioc-devel] Bioconductor credentials issue

2020-06-18 Thread Nitesh Turaga
Hi Chris, This is a very strange problem which I haven’t come across before. But let me say this though, the fact that this email "benjamin.haibe.ka...@utoronto.ca ” is connected to your username, Github ID and has your SSH keys is not correct. I

[Bioc-devel] How to set dimnames inside constructor function?

2020-06-18 Thread Muad Abd El Hay
Hello everyone, This is my first attempt at writing a package (wrote it in S3 and now porting it to S4). So it might be a trivial question. I am trying to extend the SummarizedExperiment object for calcium imaging data (no gene names as features). Features/rownames are the number of the

[Bioc-devel] Maintainer transfer

2020-06-18 Thread Jakob Wirbel
Hi all, Recently, the maintainership for the SIAMCAT package on Bioconductor was transferred from Konrad Zych (konrad.z...@embl.de) to me and the DESCRIPTION file in the Bioconductor repository was updated already. Therefore, I tried to activate my account in the BiocCredentials app, but it