Re: [Bioc-devel] BSgenome changes

2020-08-20 Thread Hervé Pagès
Kasper, The tradition so far has been to package all UCSC human genomes since hg17. We could also start producing BSgenome packages for other non-UCSC Human assemblies. We just need to draw a line somewhere. If there is a need for it we can make BSgenome.Hsapiens.NCBI.GRCh37.p13 available, as

Re: [Bioc-devel] BSgenome changes

2020-08-20 Thread Kasper Daniel Hansen
Well, the presence of two mitochondrial genomes is to fix a mistake by UCSC. I can appreciate the importance of representing this mistake when you build off UCSC. But it strikes me as not actually representing the h37 version of the genome, and it seems to me that we want such a representation in