If you have successfully built the vignette, under correct Bioconductor version
and valid installation, then I suggest pushing your changes to the Bioconductor
git repository. The NIGHTLY builds will occur, and with luck they will be
successful and visible in the next build report (either
Hi Bioconductor,
Yes, I have updated epihet because the issue
“ 'x' is NULL so the result will be NULL
Quitting from lines 483-495 (/Users/ma38727/b/git/epihet/vignettes/epihet.Rnw)
Error in ans[ypos] <- rep(yes, length.out = len)[ypos] :”
Now before to push bioconductor, I would like to build
not sure that this is a good answer or not, but on scanning your vignette I
didn't see any use of LaTeX math expressions, so perhaps mathptmx is not needed
at all in and can be removed from the vignette?
At any rate when I remove it and try
epihet/vignettes master$ R CMD Sweave --pdf
Hi Kern,
I followed your suggestion and updated my Bioconductor version and epihet,
Then when I build epihet, it complained that
The following object is masked from 'package:clusterProfiler':
select
'select()' returned 1:1 mapping between keys and columns
Error: processing vignette
same result with BiocManager::version() 3.13
From: Shraddha Pai
Date: Tuesday, November 24, 2020 at 8:13 AM
To: Martin Morgan
Cc: Bioc-devel
Subject: Re: [Bioc-devel] Running vignettes one at a time works but
build_vignettes causes buffer overflow
Hi Martin,
The issue is on the bioc-devel
Hi Martin,
The issue is on the bioc-devel version, not the release version (3.12).
Shraddha
On Tue, Nov 24, 2020 at 4:06 AM Martin Morgan
wrote:
> Please respond on the list. After creating a new clone of your package
>
>
>
> git clone g...@git.bioconductor.org:packages/netDx
>
>
>
> and
