Re: [Bioc-devel] What should I do if I need to ask my package to be deprecated?

Thank you for letting us know. I will begin the deprecation process for the package. Cheers Get Outlook for iOS From: Bioc-devel on behalf of Kozo Nishida Sent: Thursday, February 25, 2021 5:00:18 PM To: bioc-devel@r-project.org

[Bioc-devel] What should I do if I need to ask my package to be deprecated?

Hello, Can I ask my package MSEADbi to be deprecated? https://bioconductor.org/packages/release/bioc/html/MSEADbi.html I have developed an alternative (AnnotationHub) package to MSEADbi (called AHPathbankDbs https://github.com/Bioconductor/Contributions/issues/1825 ) So the MSEADbi package will

[Bioc-devel] Please change maintainer of chipenrich and chipenrich.data packages

Hello, Could we please change the maintainer of the chipenrich and chipenrich.data packages to Kai Wang (wangd...@umich.edu)? I have instructed the new maintainer to setup an account at https://support.bioconductor.org/, and I'll change the DESCRIPTION files shortly. Are there any other steps?

Re: [Bioc-devel] Rsync to Bioconductor

FYI, I just sent an email to 'maintai...@bioconductor.org' regarding this but it bounced with the below errors (I've truncated your address): From: Mail Delivery System Date: Thu, Feb 25, 2021 at 12:39 PM Subject: Undelivered Mail Returned to Sender To: ... This is the mail system at host

Re: [Bioc-devel] EXTERNAL: Re: Encountering Issues with Github sync

Hi Krithika, Regarding Step #10: It is a good idea to have a release branch checkout in your GitHub (origin) repository in case you need to commit bug fixes to that branch: http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/

Re: [Bioc-devel] Encountering Issues with Github sync

Thank you for catching that ! That was very helpful I have now completed Steps# 1 - 7 and Step # 9 from here: *http://bioconductor.org/developers/how-to/git/sync-existing-repositories/ *(I think Step # 8 does not apply

Re: [Bioc-devel] Encountering Issues with Github sync

The Bioconductor remote should not include 'ICBI, git remote remove upstream git remote add upstream g...@git.bioconductor.org:packages/CINdex.git On 2/25/21, 11:40 AM, "Bioc-devel on behalf of Krithika Bhuvaneshwar" wrote: Hello, We are the package maintaines for the CINdex

[Bioc-devel] Encountering Issues with Github sync

Hello, We are the package maintaines for the CINdex package. We have made changes in our package to address the build errors for the upcoming release. The latest code is here in our Gtithub account *https://github.com/ICBI/CINdex . *I'm trying to sync it with

Re: [Bioc-devel] Bioconductor 3.13 release date

This information has not yet been determined. Usually we try to sync with R, especially in the spring when there is a new, rather than patch, release of R. R has not announced when their release is (see https://developer.r-project.org/), so we haven't started our own release process. Likely it

[Bioc-devel] Bioconductor 3.13 release date

Hi all, I will submit a package to Bioconductor in the next few days, but I would like to know the submission deadline for my package to be included in the next Bioc release. Last year, new Bioconductor versions were released on April 28 and October 28. What about this year? I searched it