Hello,
The problem stemed from an .Rprofile file which was setting .libPaths with the
directory path to a library of packages for the previous version of R and
starting R with the --vanilla option avoided the problem.
--
Dario Strbenac
University of Sydney
Hi Martin,
thanks for your answer. The goal is to speed up my package (epialleleR),
where most of the functions are already written in C++, but the code is
single-threaded. Tasks include: apply analog of
GenomicAlignments::sequenceLayer to SEQ, QUAL and XM strings, calculate
per-read methylation
If the BAM files are each processed independently, and each processing task
takes a while, then it is probably 'good enough' to use R-level parallel
evaluation using BiocParallel (currently the recommendation for Bioconductor
packages) or other evaluation framework. Also, presumably you will
Hi,
I am the listed maintainer for the sangerseqR package. However, I am unable to
access it to push a small bug fix. I am the owner of the GitHub repository and
the maintainer listed on the bioconductor website/DESCRIPTION file. However,
when I try to push the change to upstream, I get the
