[Bioc-devel] Add dockerhub push to github repository

2021-06-02 Thread Murphy, Alan E
Hi all, I'm working on developing an R package with the aim to eventually submit to Bioconductor. I would like to automatically create a new image and push to dockerhub with github actions when I push changes to the github repository. Does anyone have an example of this process in their reposit

Re: [Bioc-devel] SummarizedExperiment assays() gives HDF5Array error in Rstudio

2021-06-02 Thread Vincent Carey
You are behind the release and should update. However, with a reasonably close instance I can't reproduce your error. I had a flaky download at one point; you might want to reconstitute your brca data. > brca = curatedTCGAData("BRCA", c("miRNASeqGene", "mRNAArray", "RPPAArray", > "Methylation_m

[Bioc-devel] SummarizedExperiment assays() gives HDF5Array error in Rstudio

2021-06-02 Thread Shraddha Pai
Hello BioC community, Calling assays() on a SummarizedExperiment object has suddenly started giving me this error in Rstudio but not on command-line R. I have been trying to solve this for a few hours without luck and any help would be great. sessionInfo() output below and this is Rstudio 1.4. Th