On 16/02/2022 00:35, migdal migdal wrote:
Dear bioc-devel,
one of the requirements for the Bioconductor package is to pass the R CMD
BUILD, including some constraints on the time. To accommodate for some
specific cases, Bioconductor implements a concept of long tests which are
excluded from the build time limit. I wonder if a corresponding concept
exists for the vignettes? I do realize the need for time constraints.
However, I think it could be of use to supplement a main vignette with
supplementary vignettes that could showcase the package use eg. on a larger
dataset. Those could have a less strict constraints policy eg. more time to
run, more resources like number of cores, RAM etc. Are there any ways to
accomplish this?
Yes, by creating (and submitting) a workflow package. This is basically
a vignette wrapped in its own dedicated package (the package typically
contains no R code).
List of existing workflow packages:
https://bioconductor.org/packages/devel/BiocViews.html#___Workflow
Workflow builds (Tuesdays and Fridays):
https://bioconductor.org/checkResults/3.15/workflows-LATEST/
Timeout limit is 2h for these packages.
Cheers,
H.
Best Maciek
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Hervé Pagès
Bioconductor Core Team
hpages.on.git...@gmail.com
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