[Bioc-devel] News: BioC2023 abstract submission is now open!

2023-02-07 Thread Maria . Doyle
Abstract submission is now open for the BioC2023 conference in Boston August 2-4 https://bioc2023.bioconductor.org/ Submit an abstract by March 19 for * Short talk * Workshop * Package demo * Birds-of-a-feather session * Poster Submit here

Re: [Bioc-devel] TiSA awaiting moderation - 1 month

2023-02-07 Thread Kern, Lori
We apologize for the delay. Normally we try to look at packages within 3-4 weeks so agreed that this is a little delayed getting back to. We will try to reassess the package shortly. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department

[Bioc-devel] TiSA awaiting moderation - 1 month

2023-02-07 Thread Yohan Lefol
Hello all, I submitted a package for bioconductor approximately two months ago (link to issue: https://github.com/Bioconductor/Contributions/issues/2883) and got quick feedback at the time with the suggestion to implement SummarizedExperiments. I have since performed these changes and commented

Re: [Bioc-devel] name for new BioC package

2023-02-07 Thread Martin Morgan
If you choose to introduce a second package, I would suggest immediately deprecating MoonlightR. The two versions co-exist for a development and release cycle for comparison / opportunity for users to adjust, and then there is only MoonlightR2. This avoids confusion for new users. You can

Re: [Bioc-devel] name for new BioC package

2023-02-07 Thread Matteo Tiberti
Dear all, thanks for your input just to answer on your different points: @Kevin Coombes I agree it can be annoying - we don't intend to heavily change the API, we mostly want to add functionality and refactoring some of the internals (including basic