Re: [Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

Awesome, thanks to both of you for checking this! Best, Leo On Thu, Mar 2, 2023 at 2:36 PM Hervé Pagès wrote: > > and also: > >kjohnson:~ biocbuild$ curl -O > https://bioconductor.org/packages/3.16/bioc/bin/macosx/big-sur-arm64/contrib/4.2/rtracklayer_1.58.0.tgz > >kjohnson:~

Re: [Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

and also:   kjohnson:~ biocbuild$ curl -O https://bioconductor.org/packages/3.16/bioc/bin/macosx/big-sur-arm64/contrib/4.2/rtracklayer_1.58.0.tgz   kjohnson:~ biocbuild$ tar zxf rtracklayer_1.58.0.tgz   kjohnson:~ biocbuild$ nm rtracklayer/libs/rtracklayer.so | grep _ssl_security  

Re: [Bioc-devel] libsbml and libxml2 on palomino3 BBS

Hi Ahmed, Thanks for your email. LIB_XML2 should point to C:\libxml2. The path for LIBSBML_PATH is correct and they exist. Since the builds started today, I will make the change tomorrow so that we'll see effect on the Saturday build report. We can troubleshoot the LIBSBML_PATH next.

Re: [Bioc-devel] Openssl is not available in netConnectHttps for importing remote BigWig files

Hi Leo, I discussed this with Herve who noticed that you're running rtracklayer on an M1 Mac, so he looked at https://bioconductor.org/checkResults/3.16/bioc-mac-arm64-LATEST/rtracklayer/kjohnson-buildbin.html. It's linking to the static libraries for libssl.a and libcrypto.a so that it can

[Bioc-devel] Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`

On March 8th, the Bioconductor Core Team will rename the default branch on `git.bioconductor.org` to `devel`. For more details, see the 1.Blog post 2.Branch Rename