Re: [Bioc-devel] Participating in the development of Bioconductor

2023-05-03 Thread Vincent Carey
Hi Franck, thanks for writing. I think it would be great to hear from users about performance concerns. We would like to do more profiling and instrumentation of key worksteps to help increase throughput and ensure available compute resources are used. In the cuda/gpu space we don't have

[Bioc-devel] Participating in the development of Bioconductor

2023-05-03 Thread Franck RICHARD
Hello community! I am the author of several software programs including this astronomy program: https://winstars.net/en I recently had the opportunity to participate in the activities of a neuroscience laboratory in Madrid. I learned how to use Bioconductor and I would like to participate in

Re: [Bioc-devel] Error pushing changes to upstream

2023-05-03 Thread Kern, Lori
I will reply off list and help you resolve this. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Gaurav Sharma

Re: [Bioc-devel] Error pushing changes to upstream

2023-05-03 Thread Gaurav Sharma via Bioc-devel
Hi, Thanks for your reply. Yes, that's what I did. Here are the commands before `git push`: ``` > git rm DESCRIPTION~ rm 'DESCRIPTION~' > git commit -m 'remove additional description file' [devel 69c5a8b] remove additional description file 1 file changed, 45 deletions(-) delete mode 100644

Re: [Bioc-devel] Error pushing changes to upstream

2023-05-03 Thread Kern, Lori
Are you able to do a git rm DESCRIPTION~​ and git commit​ those changes? Removing l ocally if it is already checked in means you have to do a git rm​ to remove from git repo. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of

[Bioc-devel] Error pushing changes to upstream

2023-05-03 Thread Gaurav Sharma via Bioc-devel
Hi, I am a developer of the package proejctR. Following the FAQ, I have checked that I have R W​ access to projectR​ and my upstream is configured correctly. I get the following error on git push: ``` Counting objects: 2, done. Delta compression using up to 12 threads. Compressing objects: