nyone, but it is still possible through
git. You need to update the version.
Best,
Kasper
On Wed, Aug 14, 2019 at 11:05 AM Erik Fasterius
mailto:erik.faster...@outlook.com>> wrote:
I made some changes to my seqCAT package the last few days in order to prepare
for version 1.0.0 of tidyr, which
I made some changes to my seqCAT package the last few days in order to prepare
for version 1.0.0 of tidyr, which was apparently harder than I initially
thought. I was also a bit too quick with pushing to Bioconductor (both the
release and devel branches), and now I’ve got several updates and
I am still getting a Windows build error in my seqCAT package. I thought this
was a problem with VariantAnnotation after an update, which also seemed to be
the case after communication with Valerie Obenchain. My package was apparently
not the only package affected by this, and I was told the
row's builds.
Valerie
On Thu, Mar 7, 2019 at 4:10 AM Erik Fasterius
mailto:erik.faster...@outlook.com>> wrote:
Hi,
My seqCAT package recently broke building on the Windows platform, which I
assume has to do with changes to the VariantAnnotation package (upon which
seqCAT depends). The
Hi,
My seqCAT package recently broke building on the Windows platform, which I
assume has to do with changes to the VariantAnnotation package (upon which
seqCAT depends). The error (which comes during the creation of the vignette)
looks like this:
Quitting from lines 102-112 (seqCAT.Rmd)
.org
<mailto:valerie.obench...@roswellpark.org>>> wrote:
Hi Erik,
There have been a few changes to VariantAnnotation lately.
I'll take a
look at seqCAT and get back to you.
Valerie
On 1/8/19 6:07 AM, Erik Fasterius wrote:
> I recently started to get
I recently started to get a weird error when building the vignette to my seqCAT
package, related to a VCF file I use as example data. The error itself looks
like this:
scanVcf: _DNAencode(): invalid DNAString input character: '1' (byte value 49)
path: (...)/seqCAT/extdata/example.vcf.gz
I can
think)
>
> df <- data.frame(vers= package_version("1.2"))
> rbind(df, df)$vers
>
> returned
>
> [1] '1.2' '1.2'
>
> now (r75945) we have
>
>> rbind(df, df)$vers
> [[1]]
> [1] 1 2
>
> [[2]]
> [1] 1 2
>
> Martin
>
Hi,
I’m currently updating my package `seqCAT` with some new code, and I always run
it through Travis CI before pushing changes to Bioconductor. The last build
errors with the following message:
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Error: invalid
