Re: [Bioc-devel] rhdf5 and left-justified output in h5ls - is this sensible?

2016-04-10 Thread Fischer, Bernd
Dear Aaron, Sorry for any inconvenience. I just wanted to change ‘aesthetics’, but not ‘expected behaviour of the function’. I moved the format call from h5ls to the show method. Will be effective in version 2.15.7 from tomorrow on. Best, Bernd On 08.04.2016, at 10:15, Aaron Lun

Re: [Bioc-devel] Reducing memory footprint of large object

2015-11-05 Thread Fischer, Bernd
Hi Christian, you should have a look at packages that for partial reading of data, like e.g. big memory that only load data partially in memory or implement partial reading yourself using HDF5 and rhdf5. Best, Bernd > On 05.11.2015, at 16:22, Christian Arnold

Re: [Bioc-devel] Short URLs for packages?

2015-03-24 Thread Fischer, Bernd
I just think there are a couple of subtleties here. I certainly don't begrudge people wanting to type less and find packages easier. But if a naive user with a default (read: release) Bioc installation goes to http://bioconductor.org/CoolAwesomePkg and see's that it is available in bioconductor

Re: [Bioc-devel] Short URLs for packages?

2015-03-23 Thread Fischer, Bernd
The cited htaccess rule just links the release version of the package. Since this would already be an improvement, it is not sufficient for links in papers. During the production process of the paper we want to link to the accompanying BioC package that is in devel, but not yet in release. Before