Hi All,
We currently have the same version of our package CausalR up in devel and
release, but while devel is showing build OK for all 3 platforms, release is
showing an build error for Mac OS.
The error is related to the vignette building:
* creating vignettes ... ERROR
Error in texi2dvi(file
importantly, would the
build:warnings in devel affect the release of the package in v3.3?
Thanks,
Glyn
From: Glyn Bradley
Sent: 16 March 2016 13:22
To: 'Kasper Daniel Hansen'
Cc: bioc-devel@r-project.org
Subject: RE: [Bioc-devel] Issues uploading our updated package (CausalR)
Thanks, we’ve already
Thanks, we’ve already read that.
I was more hoping for a response from the Bioconductor team
Glyn
From: Kasper Daniel Hansen [mailto:kasperdanielhan...@gmail.com]
Sent: 16 March 2016 13:20
To: Glyn Bradley
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Issues uploading our updated package
Hi All,
Our package CausalR depends on igraph and so broke when igraph was updated last
year.
We have now fixed CausalR to work with the latest igraph, but we're not sure
how we need to go about updating it on Bioconductor, - can we just submit our
fixed package as an update, or do we need to
Hi All,
Our package CausalR is currently broke due to the igraph updates. We're working
on fixing it, but other commitments mean I'm really not sure when we'll get it
done,
and we've been told it will be depreciated before the upcoming release.
Should that happen, will it be possible for us to
Hi All
Is it acceptable to specify a particular version of igraph for our package to
use, even as a temporary fix?
Failing that, does anyone know of any way I can get R to tell me which
functions in our package (CausalR) call which igraph functions?
Thanks
Glyn
-Original Message-
Hi All,
We're pleased to announce the release of our package 'CausalR', which provides
functions for causal reasoning (causal network analysis). The idea is to
explain sets of observed endpoints by reasoning through causal interaction
networks, so for example this type of analysis can be used
Hi
After uploading our package to the tracker, it built successfully on all
systems with no errors.
But we have the following Rtools related WARNING:
WARNING: Rtools is required to build R packages, but no version of Rtools
compatible with R 3.2.0 was found. (Only the following incompatible
Hi,
Our package uses igraph.
We have
imports: igraph in the DESCRIPTION file and
import(igraph)in the NAMESPACE
But when we try to write examples for our functions that use igraph functions
to create then use igraph objects from our input, BiocCheck fails on them.
How can we use igraph in our
