During the BioC developer day, Hervé brought up the idea of possibly extending
the concept of GenomicViews to other use cases. I'd like to share how we
currently use GenomicRanges, Views and RleLists to perform certain analyses,
and hopefully demonstrate that a way to directly use Views with
Hi,
I have been using FastqStreamer() and yield() to process a large fastq file in
chunks, modifying both the read and name and then appending the output to a new
fastq file as each chunk is processed. This works great, but would benefit
greatly from being parallelized.
As far as I can tell,
