[Bioc-devel] TENxBUSData not added to the Bioconductor git repository

2019-08-28 Thread Lu, Dongyi (Lambda)
Hi, I submitted the software package BUSpaRse and the related experimental data package TENxBUSData for review; they were accepted yesterday. BUSpaRse has been added to the Bioconductor Git repository, and I can see it in the nightly build check results. However, TENxBUSData is not seen in the

[Bioc-devel] Mixed species dataset for makeExperimentHubMetadata

2019-01-02 Thread Lu, Dongyi (Lambda)
Hi all, I have a dataset from 10x with a mixture of human and mouse cells, but the help page for makeExperimentHubMetadata says the “Species” field must have length 1, so I can’t do list column. Then how can I put both “Homo sapiens” and “Mus musculus” into the “Species” field? Best, Lambda

[Bioc-devel] New ExperimentHub resource and some related questions

2018-12-19 Thread Lu, Dongyi (Lambda)
Hi everyone, I’m writing a package (biocViews SinigleCell) that converts files of the BUS format (standing for Barcode, UMI, Set, see https://www.biorxiv.org/content/early/2018/11/21/472571) into a sparse matrix in R that can be used in Seurat and SingleCellExperiment. In order to write the