Hello,
I am addressing some issues with packages I have in Bioconductor, but I am
unsure which branch I should push the changes to now. Can I push to
the RELEASE_3_20 branch or should I use the devel or master branches?
Cheers,
Richard
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Hello,
I am trying to push changes for my package to the devel version of
Bioconductor using git push upstream master:devel, however I am getting a
connection timed out error. My package was accepted in Bioconductor 3.19
and so I am wondering if the devel branch now automatically points to the
3.2
Hello all,
My package is failing to build on Windows as one of the functions attempts
to download files from ExperimentHub and then creates a directory with
symbolic links to these files using R.utils::createLink. However, it seems
on Windows that administrative privileges are required to create s
gt; Cheers,
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
>
Hi all,
My new package on the devel version of Bioconductor is passing the
build/check report on Linux and macOS, but failing on Windows (Palomino3).
It seems some other packages that my one depends on are also failing on
Windows (e.g. rtracklayer) so I am wondering will my package still be added
If you use rig (https://github.com/r-lib/rig), you can run
> rig add next
> which works on Windows, macOS and Linux
>
> G.
>
> On Tue, Apr 23, 2024 at 11:57 AM Richard Heery
> wrote:
> >
> > I am trying to install the devel version of R, however it seems that now
>
I am trying to install the devel version of R, however it seems that now on
CRAN the current version is 4.3.3 while the devel version is 4.5 so I'm not
sure where I can find 4.4.
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Bioc-devel@r-project.org
oad the latest Bioconductor version (3.19) unless you
> have R 4.4.
>
> Cheers,
> Anatoly
>
> On Tue, Apr 23, 2024 at 2:57 AM Richard Heery
> wrote:
>
>> Hi all,
>>
>> I'm wondering what we should now list as the R version in the Depends
>> section of th
Hi all,
I'm wondering what we should now list as the R version in the Depends
section of the description file: the current version 4.3.3 or the
development version 4.4?
Cheers,
Richard
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Bioc-devel@r-pro
Hi all,
My package submission is repeatedly failing due to an error saying I am not
subscribed to the Bioc-devel mailing list, even though I am subscribed
using this email. This is the same email I have in the DESCRIPTION file and
also as my git user.email both globally and locally in the reposito
Hi all,
I am wondering if there is a maximum allowed number of cores that can be
used when building a vignette on the Bioconductor Build System? I make use
of parallel computing in one of my vignettes, but if I don't use enough
cores, it takes too long to build the vignette and I get a timeout err
Hi all,
My package tarball is only 4.4 MB when I build it without building the
vignettes. However, it increases to 7 MB when I build the vignettes. My
vignette is a html_document that creates several images and is 3.8 MB
uncompressed so quite large. Since my package is under the 5 MB limit
without
Hi all,
I have a package in review on g...@git.bioconductor.org and I have added a
remote named upstream pointing to my package there as outlined here
http://contributions.bioconductor.org/git-version-control.html#new-package-workflow
.
However, I've noticed that there are two branches on the rem
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