[Bioc-devel] Using update_remotes.sh with different user name

2017-07-04 Thread Welliton Souza
I am trying to use update_remotes.sh bash script to update the branch list. The script seems to use the system user name ('welliton' in my case). However my SVN user name is 'w.souza'. How can I use update_remotes.sh with different username? The output of the script: $ bash ../update_remotes.sh A

Re: [Bioc-devel] Recommendations for Shiny app on Bioconductor

2017-03-29 Thread Welliton Souza
Thank you all for the recommendations. It is very interesting to know how other developers are using Shiny. I have been working on a Shiny application and I did some decisions on code that are similar to your recommendations: Separate app into three files to reflect the MVC (Model, View, Controll

[Bioc-devel] Recommendations for Shiny app on Bioconductor

2017-03-29 Thread Welliton Souza
I am developing a web application using Shiny to be distributed as Bioconductor package. I would like to know if there are some recommendations for better integration with Bioconductor ecosystem. Best regards, Welliton [[alternative HTML version deleted]]

Re: [Bioc-devel] Writing examples for accessing web API

2017-03-08 Thread Welliton Souza
the loop N.TRIES should be 0 not -1. Or this line will fail. if (N.TRIES == 0L) { # line 12 Welliton On Tue, Mar 7, 2017 at 5:15 PM Welliton Souza wrote: > Thank you Martin for the response, it was very helpful. > > I am facing difficulties to write code examples, unit tests and vignettes &g

Re: [Bioc-devel] Writing examples for accessing web API

2017-03-07 Thread Welliton Souza
ed in examples, unit tests and vignettes. Welliton On Tue, Mar 7, 2017 at 4:49 PM Martin Morgan wrote: > On 03/07/2017 02:35 PM, Welliton Souza wrote: > > Thank you Nan Xiao, I think it is a good solution for my case. I will put > > the definition of host outside the \dontrun{}. >

Re: [Bioc-devel] Writing examples for accessing web API

2017-03-07 Thread Welliton Souza
> > #' token = "foo" > #' \dontrun{ > #' api(..., token)} > > Best, > -Nan > > On Tue, Mar 7, 2017 at 2:13 PM, Welliton Souza wrote: > > Hi Sean, > > It doesn't require authentication. I've been using this server ( > http://1

Re: [Bioc-devel] Writing examples for accessing web API

2017-03-07 Thread Welliton Souza
quired? Or are you connecting to a server that runs only intermittently? Sean On Tue, Mar 7, 2017 at 1:57 PM, Welliton Souza wrote: Hi, I am developing a package that access web API endpoints. I wrote the examples within \dontrun{} due to internet connection requirements. However, the BiocChe

[Bioc-devel] Writing examples for accessing web API

2017-03-07 Thread Welliton Souza
and processing response data. Best regards, Welliton Souza [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

[Bioc-devel] Issue on MEDIPS.CpGenrich function

2015-09-16 Thread Welliton Souza
I found a problem in MEDIPS.CpGenrich function (development version). When I run the example of this function I got the following error: Error in seqlengths(seqinfo(x)) : error in evaluating the argument 'x' in selecting a method for function 'seqlengths': Error in (function (classes, fdef, mtab