Hi Nan, rCDK 3.3.6 requires Java8 and will throw error if the Java environment is incorrect. BioC Build only has Java7 hence the error. The new version of rCDK requires Java7. Once rcdk 3.3.8 makes it onto the BioC builds (its on CRAN), these errors should clear up. Please keep me posted if they don't.
zach cp On Mon, Dec 5, 2016 at 3:43 PM, Nan Xiao <road2s...@gmail.com> wrote: > Hey guys, > > - it seems this problem is also affecting the other two Bioc packages > depending on rcdk, i.e. RMassBank and rcellminer (release + devel). Any > ideas why? > > Thanks, > -Nan > > On Fri, Dec 2, 2016 at 2:29 PM, Nan Xiao <road2s...@gmail.com> wrote: > >> Hi Bioc, >> >> - the Rcpi package depends on rcdk, and the rcdk package was updated last >> week from 3.3.6 to 3.3.8 on CRAN thanks to Zach's (cc'd) work, which >> removed the Java > 1.8 requirement (previously discussed in >> https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009881.html ). >> >> I've updated the Rcpi package and specified the rcdk version to be >= >> 3.3.8, while the most recent Mac build gives the error: ( >> http://bioconductor.org/checkResults/release/bioc-LATEST/ >> Rcpi/morelia-buildsrc.html ) >> >> namespace 'rcdk' 3.3.6 is being loaded, but >= 3.3.8 is required. >> >> So it seems morelia is still using rcdk 3.3.6, while this >= 3.3.8 >> version requirement is fulfilled by Linux and Windows builds (if I >> understand correctly). >> >> Is there anything I could do to solve this issue? >> >> Thanks a lot, >> -Nan >> >> -- >> http://nanx.me >> > > > > -- > http://nanx.me > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
