Re: [Bioc-devel] Replacement for CytoscapeWindowClass from devel RCy3

Thanks again Alex! Copying bioc-devel list in case anyone else has similar issues. On Fri, Mar 30, 2018, 8:15 PM Alex Pico wrote: > I think that’s correct. A few tips based on looking at your particular > usage… > > 1) cw <- CytoscapeWindow(graphName,

Re: [Bioc-devel] Replacement for CytoscapeWindowClass from devel RCy3

Hi Robert, Indeed, lots of changes being made in this major version bump to RCy3. The goals are to align better with the rapid development of Cytoscape’s REST API. A description of how to “upgrade” existing scripts is provided here:

[Bioc-devel] Replacement for CytoscapeWindowClass from devel RCy3

My package, categoryCompare, is failing in Bioc devel. The reason appears to be exports in previous versions of RCy3 no longer being exported, namely the "CytoscapeWindowClass". I had some methods where behavior was defined based on being passed an object of "CytoscapeWindowClass" (see