Re: [Bioc-devel] Append/combine option for filterFastq and similar?

2015-04-22 Thread Ryan C. Thompson
/combine option for filterFastq and similar? ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman

Re: [Bioc-devel] Append/combine option for filterFastq and similar?

2015-04-22 Thread Jim Hester
-requ...@r-project.org wrote: Re: Append/combine option for filterFastq and similar? ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r

Re: [Bioc-devel] Append/combine option for filterFastq and similar?

2015-04-22 Thread Martin Morgan
unix command is very easy system('cat *.fastq all.fastq') --- On Apr 22, 2015, at 6:00, bioc-devel-requ...@r-project.org wrote: Re: Append/combine option for filterFastq and similar? ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch

Re: [Bioc-devel] Append/combine option for filterFastq and similar?

2015-04-22 Thread Aedin
This is one instance were a system or simple unix command is very easy system('cat *.fastq all.fastq') --- On Apr 22, 2015, at 6:00, bioc-devel-requ...@r-project.org wrote: Re: Append/combine option for filterFastq and similar? ___ Bioc-devel@r

Re: [Bioc-devel] Append/combine option for filterFastq and similar?

2015-04-21 Thread Martin Morgan
On 04/21/2015 02:18 PM, Ryan C. Thompson wrote: Hello, Often when sequence data is delivered to me, I receive each sample in several input files. Generally I want to get them into a single file ASAP, and the filterFastq step would be a convenient place to do it. Is there any possibility to add