Re: [Bioc-devel] BSgenome changes

2020-08-20 Thread Hervé Pagès
project.org <mailto:bioc-devel@r-project.org> >     <mailto:bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>> >      > Cc: charlotte.sone...@fmi.ch <mailto:charlotte.sone...@fmi.ch> <mailto:charlotte.sone...@fmi.ch <

Re: [Bioc-devel] BSgenome changes

2020-08-20 Thread Kasper Daniel Hansen
gt;> > Yes, seqlevelsStyle() is sorting out all this mess for you ;-) >> > >> > Cheers, >> > H. >> > >> > > >> > > Thanks again for the explanation. >> > > >> > > Cheers, >

Re: [Bioc-devel] BSgenome changes

2020-08-18 Thread Leonard Goldstein via Bioc-devel
; > > > > Thanks again for the explanation. > > > > > > Cheers, > > > Felix > > > > > > -Ursprüngliche Nachricht- > > > Von: Bioc-devel > <mailto:bioc-devel-boun...@r-

Re: [Bioc-devel] BSgenome changes

2020-08-18 Thread Hervé Pagès
..@r-project.org>> Im Auftrag von Hervé Pagès > Gesendet: Freitag, 14. August 2020 01:08 > An: Leonard Goldstein mailto:goldstein.leon...@gene.com>>; bioc-devel@r-project.org <mailto:bioc-devel@r-project.org> > Cc: charlotte.sone...@fmi.ch <mailto:

Re: [Bioc-devel] BSgenome changes

2020-08-18 Thread Kasper Daniel Hansen
ks again for the explanation. > > > > Cheers, > > Felix > > > > -Ursprüngliche Nachricht- > > Von: Bioc-devel Im Auftrag von Hervé > Pagès > > Gesendet: Freitag, 14. August 2020 01:08 > > An: Leonard Goldstein ; > bioc-devel@r-project.or

Re: [Bioc-devel] BSgenome changes

2020-08-14 Thread Hervé Pagès
n. Cheers, Felix -Ursprüngliche Nachricht- Von: Bioc-devel Im Auftrag von Hervé Pagès Gesendet: Freitag, 14. August 2020 01:08 An: Leonard Goldstein ; bioc-devel@r-project.org Cc: charlotte.sone...@fmi.ch Betreff: Re: [Bioc-devel] BSgenome changes Hi Leonard, On 8/12/20 15:22, Leonard

Re: [Bioc-devel] BSgenome changes

2020-08-13 Thread Felix Ernst
s Gesendet: Freitag, 14. August 2020 01:08 An: Leonard Goldstein ; bioc-devel@r-project.org Cc: charlotte.sone...@fmi.ch Betreff: Re: [Bioc-devel] BSgenome changes Hi Leonard, On 8/12/20 15:22, Leonard Goldstein via Bioc-devel wrote: > Dear Bioc team, > > I'm following up on this recent Git

Re: [Bioc-devel] BSgenome changes

2020-08-13 Thread Hervé Pagès
Hi Leonard, On 8/12/20 15:22, Leonard Goldstein via Bioc-devel wrote: Dear Bioc team, I'm following up on this recent GitHub issue

[Bioc-devel] BSgenome changes

2020-08-12 Thread Leonard Goldstein via Bioc-devel
Dear Bioc team, I'm following up on this recent GitHub issue . Please see the issue for more details and code examples. It looks like changes in Bioc devel result in two copies of the mitochondrial chromosome for BSgenome.Hsapiens.UCSC.hg19 -- one named