Re: [Bioc-devel] Bioc-devel changes and SummarizedExperiment class

Thanks Hervé! Leonard On Tue, Apr 10, 2018 at 11:03 AM, Hervé Pagès wrote: > Hi Leonard, > > This should be fixed in SGSeq 1.13.6 (see commit > 5dc16968f7ea1a4b59595ebaabacca9a76699b80). > > Cheers, > H. > > > On 04/04/2018 09:23 AM, Leonard Goldstein wrote: > >> Hi

Re: [Bioc-devel] Bioc-devel changes and SummarizedExperiment class

Hi Leonard, This should be fixed in SGSeq 1.13.6 (see commit 5dc16968f7ea1a4b59595ebaabacca9a76699b80). Cheers, H. On 04/04/2018 09:23 AM, Leonard Goldstein wrote: Hi Hervé, Some recent changes in bioc-devel are causing trouble with SummarizedExperiment objects if the rowRanges slot inherits

[Bioc-devel] Bioc-devel changes and SummarizedExperiment class

Hi Hervé, Some recent changes in bioc-devel are causing trouble with SummarizedExperiment objects if the rowRanges slot inherits from GRangesList. Please see example below. Thanks in advance for your help. Leonard -- > library(SGSeq) > > ## SGVariants object inherits from GRangesList >