Hi all,
One last plug to update your NEWS files. We branch on Monday so please
commit changes before then.
Valerie
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or
agent responsible for the
Yes, that's what the API freeze means. The goal is to prevent last
minute changes in chimeraviz from breaking downstream packages that
depend on chimeraviz. By the way, the API freeze was Friday, April 7.
Valerie
On 04/21/2017 03:21 AM, Stian Lågstad wrote:
I've added a new function to my
I've added a new function to my package chimeraviz (so far it's in a
separate branch and not commited to Bioconductor). Does the API freeze mean
that I have to wait until the Bioconductor release before I commit it to
the devel branch?
On Fri, Apr 7, 2017 at 2:38 AM, Valerie Obenchain
of Obenchain,
> Valerie [valerie.obench...@roswellpark.org]
> Sent: Wednesday, April 19, 2017 9:19 PM
> To: bioc-devel@r-project.org
> Subject: [Bioc-devel] Bioconductor 3.5 release: potential deprecations
>
> Hi,
>
> Due to errors / unresponsive maintainers this new g
.
Thanks!
Kind regards,
Roel Janssen
From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Obenchain,
Valerie [valerie.obench...@roswellpark.org]
Sent: Wednesday, April 19, 2017 9:19 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Bioconductor
Hi,
Due to errors / unresponsive maintainers this new group of packages has
been identified for potential deprecation in Biocondcutor 3.5.
anamiR
FunChiP
MutationalPatterns
seqplots
snm
ssviz
stepwiseCM
ToPASeq
If anyone is interested in taking over as maintainer please let us know.
If not
Reminder to please update your NEWS files. These files are collated and
included in the release announcement so it's worth polishing them up.
Thanks.
Valerie
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the
Today we'll stop commits to the 3.4 release branch at COB EST. Please
commit any last changes before that time. We'll wait one more day to get
a final build report and then stop the release builds all together.
Thanks.
Valerie
This email message may contain legally privileged and/or
Hi,
Some recent activity has caused some (red) ripples across the builds and
the El Capitan Mac builds are still unsettled. To accommodate, we're
extending the deadline to pass R CMD build and check with no errors to
next Friday (http://www.bioconductor.org/developers/release-schedule/).
Hi,
The new db0, OrgDb and TxDb packages are now available in the devel branch.
# db0:
Updated all 19:
anopheles.db0_3.4.2.tar.gz
chicken.db0_3.4.2.tar.gz
fly.db0_3.4.2.tar.gz
pig.db0_3.4.2.tar.gz
xenopus.db0_3.4.2.tar.gz
arabidopsis.db0_3.4.2.tar.gz
chimp.db0_3.4.2.tar.gz
The new db0 packages (all version 3.4.2) are now available in the devel
repo. Let me know if you notice any problems.
Thanks.
Valerie
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or
agent
Hi all,
Reminder that today (March 31) is the last day for new package
submissions. I've run into a few problems generating the db0 annotation
packages so unfortunately they won't be ready today - I'm hoping Monday
at the latest.
http://www.bioconductor.org/developers/release-schedule/
Dear annotation contributors,
Just a reminder the deadline to update annotation packages is Friday
April 7. Please make updated packages available via dropbox or another
location that allows wget. Indicate if the old version should be
included in the upcoming release or if the new package should
Sorry, xcms was a mistake on my part. This package is not deprecated.
Valerie
On 03/23/2017 10:06 AM, Obenchain, Valerie wrote:
> Just a heads up about deprecated packages.
>
> These have been 'deprecated' in Biocondcutor 3.4 and will be 'defunct'
> in Bioconductor 3.5. The 'defunct' status
Hi all,
The release of Bioconductor 3.5 will be Tuesday, April 25. Please see
the schedule for details:
http://www.bioconductor.org/developers/release-schedule/
Over the next month we'll announce the key deadlines on bioc-devel. Lori
sent the first one last week and it's important for anyone
15 matches
Mail list logo
