Hi, The new db0, OrgDb and TxDb packages are now available in the devel branch.
# db0: Updated all 19: anopheles.db0_3.4.2.tar.gz chicken.db0_3.4.2.tar.gz fly.db0_3.4.2.tar.gz pig.db0_3.4.2.tar.gz xenopus.db0_3.4.2.tar.gz arabidopsis.db0_3.4.2.tar.gz chimp.db0_3.4.2.tar.gz human.db0_3.4.2.tar.gz rat.db0_3.4.2.tar.gz yeast.db0_3.4.2.tar.gz bovine.db0_3.4.2.tar.gz ecoliK12.db0_3.4.2.tar.gz malaria.db0_3.4.2.tar.gz rhesus.db0_3.4.2.tar.gz zebrafish.db0_3.4.2.tar.gz canine.db0_3.4.2.tar.gz ecoliSakai.db0_3.4.2.tar.gz mouse.db0_3.4.2.tar.gz worm.db0_3.4.2.tar.gz # OrgDb: Updated all 19: org.Ce.eg.db_3.4.1.tar.gz org.EcK12.eg.db_3.4.1.tar.gz org.Mm.eg.db_3.4.1.tar.gz org.Rn.eg.db_3.4.1.tar.gz org.Ag.eg.db_3.4.1.tar.gz org.Cf.eg.db_3.4.1.tar.gz org.EcSakai.eg.db_3.4.1.tar.gz org.Mmu.eg.db_3.4.1.tar.gz org.Sc.sgd.db_3.4.1.tar.gz org.At.tair.db_3.4.1.tar.gz org.Dm.eg.db_3.4.1.tar.gz org.Gg.eg.db_3.4.1.tar.gz org.Pf.plasmo.db_3.4.1.tar.gz org.Ss.eg.db_3.4.1.tar.gz org.Bt.eg.db_3.4.1.tar.gz org.Dr.eg.db_3.4.1.tar.gz org.Hs.eg.db_3.4.1.tar.gz org.Pt.eg.db_3.4.1.tar.gz org.Xl.eg.db_3.4.1.tar.gz # TxDb: Added 1 new package: TxDb.Ggallus.UCSC.galGal5.refGene_3.4.0.tar.gz Updated 4 active tracks: TxDb.Celegans.UCSC.ce11.refGene_3.4.1.tar.gz TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.1.tar.gz TxDb.Dmelanogaster.UCSC.dm6.ensGene_3.4.1.tar.gz TxDb.Rnorvegicus.UCSC.rn6.refGene_3.4.1.tar.gz # Updated PFAM and GO: PFAM.db_3.4.1.tar.gz GO.db_3.4.1.tar.gz I found what appear to be 2 abandoned OrgDb packages, org.Tgondii.eg.db_1.0.tar.gz and org.Sco.eg.db_2.4.2.tar.gz. It looks like these were last updated in October 2015. I've emailed the authors but one bounced the other hasn't responded. Given that the OrgDb data are a snapshot in time vs tied to a genome build it's important to regenerate these every 6 months. If I don't hear back from the authors I'll remove these from the repo. Valerie This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
