Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-26 Thread Vladislav Petyuk
: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 6:56:56 PM Subject: Re: [Bioc-devel] Challenges with package installation on fresh R Hi Vladislav, On 06/25/2015 01:13 PM, Vladislav Petyuk wrote: Yes, the issue is the same if I use devtools::install_github(vladpetyuk/toypack

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-26 Thread Vladislav Petyuk
, Dan Tenenbaum dtene...@fredhutch.org Cc: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 6:56:56 PM Subject: Re: [Bioc-devel] Challenges with package installation on fresh R Hi Vladislav, On 06/25/2015 01:13 PM, Vladislav Petyuk wrote: Yes, the issue is the same if I use

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-26 Thread Vladislav Petyuk
: [Bioc-devel] Challenges with package installation on fresh R Hi Vladislav, On 06/25/2015 01:13 PM, Vladislav Petyuk wrote: Yes, the issue is the same if I use devtools::install_github(vladpetyuk/toypack, build_vignettes=TRUE, dependencies=TRUE) I posted on Bioc-devel list

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Vladislav Petyuk
Sent: Thursday, June 25, 2015 12:16:50 PM Subject: [Bioc-devel] Challenges with package installation on fresh R Hi all, I ran into a problem with dependencies during package installation. Here is an example that intends to reproduce the problem https://github.com/vladpetyuk/toypack

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Dan Tenenbaum
- Original Message - From: Vladislav Petyuk pet...@gmail.com To: Dan Tenenbaum dtene...@fredhutch.org Cc: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 12:55:56 PM Subject: Re: [Bioc-devel] Challenges with package installation on fresh R Just added the full output

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Dan Tenenbaum
- Original Message - From: Dan Tenenbaum dtene...@fredhutch.org To: Vladislav Petyuk pet...@gmail.com Cc: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 1:08:50 PM Subject: Re: [Bioc-devel] Challenges with package installation on fresh R - Original Message

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Vladislav Petyuk
Sent: Thursday, June 25, 2015 12:16:50 PM Subject: [Bioc-devel] Challenges with package installation on fresh R Hi all, I ran into a problem with dependencies during package installation. Here is an example that intends to reproduce the problem https://github.com/vladpetyuk

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Dan Tenenbaum
- Original Message - From: Vladislav Petyuk pet...@gmail.com To: Dan Tenenbaum dtene...@fredhutch.org Cc: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 1:13:07 PM Subject: Re: [Bioc-devel] Challenges with package installation on fresh R Yes, the issue is the same if I

[Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Vladislav Petyuk
Hi all, I ran into a problem with dependencies during package installation. Here is an example that intends to reproduce the problem https://github.com/vladpetyuk/toypack Majority of the packages (in Imports/Depends/Suggests and their Imports/Depends/Suggests) install just fine. However there is

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Dan Tenenbaum
- Original Message - From: Vladislav Petyuk pet...@gmail.com To: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 12:16:50 PM Subject: [Bioc-devel] Challenges with package installation on fresh R Hi all, I ran into a problem with dependencies during package installation

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Dan Tenenbaum
- Original Message - From: Hervé Pagès hpa...@fredhutch.org To: Vladislav Petyuk pet...@gmail.com, Dan Tenenbaum dtene...@fredhutch.org Cc: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 6:56:56 PM Subject: Re: [Bioc-devel] Challenges with package installation on fresh R

Re: [Bioc-devel] Challenges with package installation on fresh R

2015-06-25 Thread Hervé Pagès
Tenenbaum dtene...@fredhutch.org Cc: Bioc-devel@r-project.org Sent: Thursday, June 25, 2015 12:55:56 PM Subject: Re: [Bioc-devel] Challenges with package installation on fresh R Just added the full output to the README.md file https://github.com/vladpetyuk/toypack/blob/master/README.md Do you