Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi, On Do, 2016-10-06 at 23:10 +0100, Laurent Gatto wrote: ... > The failing checks should be fixed too now.  While this fix did not make it into todays build,  I can confirm that current muR in SVN has working  examples in the man pages, and does not exhibit  the check ERRORs. Yours, Steffen

Re: [Bioc-devel] Harman not building on Windows due to mzR

Nice one! Cheers, Jason From: Laurent Gatto Sent: Friday, 7 October 2016 9:10 AM To: Hervé Pagès Cc: Steffen Neumann; Ross, Jason (H, North Ryde); bioc-devel@r-project.org Subject: Re: [Bioc-devel] Harman not building on Windows due to

Re: [Bioc-devel] Harman not building on Windows due to mzR

On 10/06/2016 03:10 PM, Laurent Gatto wrote: On 6 October 2016 23:01, Hervé Pagès wrote: On 10/06/2016 12:15 AM, Steffen Neumann wrote: Hi, On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: ... As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the

Re: [Bioc-devel] Harman not building on Windows due to mzR

On 6 October 2016 23:01, Hervé Pagès wrote: > On 10/06/2016 12:15 AM, Steffen Neumann wrote: >> Hi, >> >> On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: >>> ... As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the final linking of the

Re: [Bioc-devel] Harman not building on Windows due to mzR

On 10/06/2016 12:15 AM, Steffen Neumann wrote: Hi, On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: ... As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the final linking of the compiled objects failed? The error message is confusing: mzR.dll is

Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi, On Mi, 2016-10-05 at 11:32 -0700, Hervé Pagès wrote: > > > ... > > As a guess, if there are no compiler errors but 'mzR.dll' cannot be > > found, I suppose the final linking of the compiled objects failed? > The error message is confusing: mzR.dll is actually here but it > cannot be loaded.

Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi, On Mi, 2016-10-05 at 10:53 -0700, Hervé Pagès wrote: > Any reason you're linking mzR.dll against your own precompiled > libnetcdf.a? (located in mzR/src/win/). This masks the libnetcdf.a > that I installed on tokay1 per your request a couple of weeks ago > (by just extracting Ripley's

Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi Jason, On 10/05/2016 05:08 AM, jason.r...@csiro.au wrote: Hi Steffen, I also develop on Linux, so I'm at a loss with compiling Bioconductor libs on Windows. As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the final linking of the compiled objects

Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi Steffen, Any reason you're linking mzR.dll against your own precompiled libnetcdf.a? (located in mzR/src/win/). This masks the libnetcdf.a that I installed on tokay1 per your request a couple of weeks ago (by just extracting Ripley's spatial324.zip inside C:\local323). Why not remove these

Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi, On Mi, 2016-10-05 at 12:08 +, jason.r...@csiro.au wrote: > > ... > As a guess, if there are no compiler errors but 'mzR.dll' cannot be > found, I suppose the final linking of the compiled objects failed?  I now have a working version here locally, and several minutes ago Laurent Gatto

Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi Steffen, I also develop on Linux, so I'm at a loss with compiling Bioconductor libs on Windows. As a guess, if there are no compiler errors but 'mzR.dll' cannot be found, I suppose the final linking of the compiled objects failed? I did a quick search and there seems to be a precedence

Re: [Bioc-devel] Harman not building on Windows due to mzR

Hi, Jason,  On Mi, 2016-10-05 at 03:40 +, jason.r...@csiro.au wrote: > > [...] > This is arising from the vignette and is due to the package msmsEDA > not being present. If I keep peeling the dependencies back, I get to > mzR, which has trouble loading the Windows dynamic link library. See:

[Bioc-devel] Harman not building on Windows due to mzR

Hi there, I notice the Harman package which I maintain is not building on Windows. See: http://bioconductor.org/checkResults/3.4/bioc-LATEST/Harman/? This is arising from the vignette and is due to the package msmsEDA not being present. If I keep peeling the dependencies back, I get to mzR,