I did a little work in this area, relieving GenomicRanges of dependency on
KEGG.db.
For your example, which does not run (?), I would suggest
a) avoiding the use of the old environments like hgu95av2PATH2PROBE,
replacing
this with AnnotationDbi::select calls
b) replace the KEGG.db invocations
Hi all,
In my package adSplit, I use microarray annotation packages like hgu95av2.db to
find probes for pathways (in hgu95av2PATH2PROBE). In order to find names out of
these KEGG identifiers, I use KEGG.db. However, KEGG.db is deprecated starting
bioconductor 3.13 and bioconductor officials
