Hi Herve,
thank you for your answer. To be honest I am fine if the data sets can
not be loaded with data() solution.
Falsely I said a warning occurred during the BiocCheck. A warning
occurred during the R check command of my data package. I used the
recommended R CMD check environment flags
Thank you for your example Kasper. The require option seems to be an
option for me. I am following the Bioconductor "Circular Dependencies"
Guidelines
(https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#submitting-related-packages)
to implement my software and my data pac
Tobias,
When you use the data() command on the data package, you need to do
library(dummyData)
first (and you therefore need to Suggest: dummyData)
Here is an example from minfi/minfiData
if (require(minfiData)) {
dat <- preprocessIllumina(RGsetEx, bg.correct=FALSE, normalize="controls")
}
On 1/9/20 13:00, web working wrote:
> Hi Herve,
>
> thank you for your detailed answer. I guess I have expressed myself
> unclear. The BED files were just examples for data I store in the
> inst/extdata folder. Based on the description for ExperimentHubData I
> have decided to create a software
Hi Richard,
It depends on the filetype. I am loading my "non RData" files with
read.delim and my RData files with a helper function which returns a R
object of the RData object:
#' Load RData object and returns first entry
#'
#' Load RData object and returns first entry. If there is more than o
Hi Herve,
thank you for your detailed answer. I guess I have expressed myself
unclear. The BED files were just examples for data I store in the
inst/extdata folder. Based on the description for ExperimentHubData I
have decided to create a software and a data package (no
ExperimentHubData soft
Hi Tobias,
If the original data is in BED files, there should be no need to
serialize the objects obtained by importing the files. It is **much**
better to provide a small helper function that creates an object from a
BED file and to use that function each time you need to load an object.
This
Dear all,
I am currently developing a software package (dummySoftware) and a data package
(dummyData) and I am a bit confused in where to store my RData files in the
data package. Here my situation:
I want to store some software package objects (new class objects of the
software package) in t
