Re: [Bioc-devel] Need for file-based handling of meta-data

2016-06-29 Thread Thomas Girke
Great thanks. I will add some ideas later this week or next week. Thomas On Wed, Jun 29, 2016 at 12:44 PM Martin Morgan < martin.mor...@roswellpark.org> wrote: > On 06/29/2016 03:42 PM, Thomas Girke wrote: > > Yes, a "readSummarizedExperiment" would be a "modern-day analog of > >

Re: [Bioc-devel] Need for file-based handling of meta-data

2016-06-29 Thread Martin Morgan
On 06/29/2016 03:42 PM, Thomas Girke wrote: Yes, a "readSummarizedExperiment" would be a "modern-day analog of Biobase::readExpressionSet". I also agree with the other suggestions including github to get this started, and Vince's thoughts on binding meta-data more tightly to source data as well

Re: [Bioc-devel] Need for file-based handling of meta-data

2016-06-29 Thread Thomas Girke
Yes, a "readSummarizedExperiment" would be a "modern-day analog of Biobase::readExpressionSet". I also agree with the other suggestions including github to get this started, and Vince's thoughts on binding meta-data more tightly to source data as well as improving interoperability. As suggested I