lhomme
Sent: Monday, January 20, 2020 4:43:11 AM
To: Martin Morgan
Cc: Dan Tenenbaum
Subject: Re: [Bioc-devel] Problem with uncompressing files on tokay1?
Hej Martin and Dan!
First of all, I wish you both a happy new year!
I have made the move to the BiocFileCache, but the build report
Hej Martin and Dan!
First of all, I wish you both a happy new year!
I have made the move to the BiocFileCache, but the build report (3.10 for
easyRNASeq) fails as follows:
* creating vignettes ... ERROR
--- re-building ‘simpleRNASeq.Rmd’ using rmarkdown
Quitting from lines 40-41
Could this be another instance where you need to specify mode = "wb" when
you call download.file()? I've seen many examples of Windows downloads
being corrupted because it uses mode = "w" by default.
Presumably BiocFileCache would both handle this correctly and save multiple
downloads, so it's a
Thanks this seems like a problem with large file size on Windows, probably in
Rhtslib.
It might be better practice and more reliable to use BiocFileCache for
downloads, e.g.,
url =
Hej!
The easyRNASeq package is not building on tokay1, with what seems to be a file
decompression issue?
https://master.bioconductor.org/checkResults/3.10/bioc-LATEST/easyRNASeq/tokay1-buildsrc.html
It works fine on the other OSs.
The error is triggered while downloading a small dataset
