Re: [Bioc-devel] Recent issue with plot method dispatch

2013-03-18 Thread Martin Morgan
On 03/14/2013 07:16 AM, Joern Toedling wrote: Hello, thanks for following up on this, Martin. Indeed the problem was the missing S4 generic for plot was the problem. For some reason, the most recent version of R requires to declare this explicitly or to import the generic plot from another

Re: [Bioc-devel] Recent issue with plot method dispatch

2013-03-14 Thread Joern Toedling
Hello, thanks for following up on this, Martin. Indeed the problem was the missing S4 generic for plot was the problem. For some reason, the most recent version of R requires to declare this explicitly or to import the generic plot from another package. While before, I think that such a

[Bioc-devel] Recent issue with plot method dispatch

2013-03-13 Thread Joern Toedling
Hello, I have encountered a strange issue with the plotting function in my package girafe that I need some help with. I haven't changed anything in the plot methods or the NAMESPACE of the package recently, and it worked before, yet I observe the following error now. When calling the plot

Re: [Bioc-devel] Recent issue with plot method dispatch

2013-03-13 Thread Dan Tenenbaum
On Wed, Mar 13, 2013 at 4:02 AM, Joern Toedling j.toedl...@imb-mainz.de wrote: Hello, I have encountered a strange issue with the plotting function in my package girafe that I need some help with. I haven't changed anything in the plot methods or the NAMESPACE of the package recently, and it

Re: [Bioc-devel] Recent issue with plot method dispatch

2013-03-13 Thread Nikolas Pontikos
Have a look at showMethods(), see if your method shows up in the registry. See Access to the Registry section of this presentation for more information: http://www.r-project.org/conferences/useR-2004/Keynotes/Leisch.pdf On 13 March 2013 16:59, Dan Tenenbaum dtene...@fhcrc.org wrote: On Wed,

Re: [Bioc-devel] Recent issue with plot method dispatch

2013-03-13 Thread Martin Morgan
On 03/13/2013 04:02 AM, Joern Toedling wrote: Hello, I have encountered a strange issue with the plotting function in my package girafe that I need some help with. I haven't changed anything in the plot methods or the NAMESPACE of the package recently, and it worked before, yet I observe the