Hi Valerie,
I added a short explanation to
http://lcolladotor.github.io/SnowParam-memory/ about how the files are
linked (see commit
https://github.com/lcolladotor/SnowParam-memory/commit/602e42dd60e4a988425bf41b774263c058a7551a).
The entry you selected,
Hi,
Thanks for sending the updated information. To make sure I know how the
files relate, let's take snow-3.2.x, BiocParallel 1.3.34 run on July 14
as an example.
memory files:
The mem_email files report max virtual memory (Max vmem) on the master,
for the whole job. I see 3 outputs here -
Hi Valerie,
My other recent thread about SnowParam
(https://stat.ethz.ch/pipermail/bioc-devel/2015-July/007788.html)
allowed me to see a small difference.
In R 3.1.x, using 'outfile' as in
Hi,
Thanks for reporting the bug. Now fixed in 1.13.4 (devel) and 1.2.2
(release).
bplapply(1:2, print, BPPARAM=SnowParam(outfile = NULL))
starting worker for localhost:11031
starting worker for localhost:11031
Type: EXEC
[1] 1
Type: EXEC
[1] 2
Type: DONE
Type: DONE
[[1]]
[1] 1
[[2]]
[1] 2
Hi,
This might be a BioC support website question, but maybe it's a bug.
In previous versions of BiocParallel, you could specify where to
direct the output from the workers by using the 'outfile' argument.
For example, SnowParam(outfile = Sys.getenv('SGE_STDERR_PATH')). I'm
not finding how to do
