Re: [Bioc-devel] S4 classes extending GRangesList

Great, thank you Hervé. Best wishes, Leonard On Tue, Sep 29, 2015 at 2:07 PM, Hervé Pagès wrote: > Hi Leonard, > > Fixed in IRanges 2.3.22 (devel) and 2.2.8 (release). Now the "c" method > for CompressedList objects should always return an object of the same > class as

Re: [Bioc-devel] S4 classes extending GRangesList

Hi Leonard, Fixed in IRanges 2.3.22 (devel) and 2.2.8 (release). Now the "c" method for CompressedList objects should always return an object of the same class as its 1st argument. Thanks for your patience and for the reminder. H. On 09/29/2015 10:35 AM, Leonard Goldstein wrote: Hi Hervé,

Re: [Bioc-devel] S4 classes extending GRangesList

Hi Hervé, This still looks broken in the current bioc-devel. Just wanted to follow up in case it got missed. Thanks again. Leonard On Thu, Jun 11, 2015 at 11:59 AM, Leonard Goldstein wrote: > Thanks Hervé. > > Best wishes, > > Leonard > > > On Thu, Jun 11, 2015 at 10:58

[Bioc-devel] S4 classes extending GRangesList

Hi all, I noticed that when combining instances of a class that inherits from GRangesList, the result does not preserve the class (it is returned as a GRangesList instead). The class is preserved in other situations (e.g. when a class extends GRanges). See below for an example. Is there a reason

Re: [Bioc-devel] S4 classes extending GRangesList

Hi Leonard, It's a bug in the c method for CompressedList object. I'll fix that. Thanks for the report. H. On 06/11/2015 10:48 AM, Leonard Goldstein wrote: Hi all, I noticed that when combining instances of a class that inherits from GRangesList, the result does not preserve the class (it is

Re: [Bioc-devel] S4 classes extending GRangesList

Thanks Hervé. Best wishes, Leonard On Thu, Jun 11, 2015 at 10:58 AM, Hervé Pagès hpa...@fredhutch.org wrote: Hi Leonard, It's a bug in the c method for CompressedList object. I'll fix that. Thanks for the report. H. On 06/11/2015 10:48 AM, Leonard Goldstein wrote: Hi all, I